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Analyze retinal optical coherence tomography images.

38 commits | Last update: October 16, 2018

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What OCTSEG can do for you

  • The retinal layers and the blood vessels of retinal OCT scans can be segmented
  • Automated segmentation of 6 prominent retinal layers: the inner limiting membrane, outer nerve fiber layer boundary, and retinal pigment epithelium
  • Automated segmentation of the blood vessel positions on circular scans and batch processing of circular scans and manual correction of possible segmentation errors
  • Visualization of the data and the segmentation results, including enface views and thickness maps
  • Export of the segmentation results to CSV text files
  • Includes segmentation of phantom images
  • Successfully used in "A Lightpath for Optical Coherence Tomography Imaging" project
  • Image processing
Programming Language
  • Apache-2.0
Source code

Participating organizations


  • Markus Mayer
  • Elena Ranguelova
    Netherlands eScience Center
Contact person
Elena Ranguelova
Netherlands eScience Center